Optical imaging methods using calcium indicators are critical for monitoring the activity of large neuronal populations in vivo. Imaging experiments typically generate a large amount of data that needs to be processed to extract the activity of the imaged neuronal sources. While deriving such processing algorithms is an active area of research, most existing methods require the processing of large amounts of data at a time, rendering them vulnerable to the volume of the recorded data, and preventing real-time experimental interrogation. Here we introduce OnACID, an Online framework for the Analysis of streaming Calcium Imaging Data, including i) motion artifact correction, ii) neuronal source extraction, and iii) activity denoising and deconvolution. Our approach combines and extends previous work on online dictionary learning and calcium imaging data analysis, to deliver an automated pipeline that can discover and track the activity of hundreds of cells in real time, thereby enabling new types of closed-loop experiments. We apply our algorithm on two large scale experimental datasets, benchmark its performance on manually annotated data, and show that it outperforms a popular offline approach.

We present Kernel-QuantTree Exponentially Weighted Moving Average (KQT-EWMA), a non-parametric change-detection algorithm that combines the Kernel-QuantTree (KQT) histogram and the EWMA statistic to monitor multivariate data streams online. The resulting monitoring scheme is very flexible, since histograms can be used to model any stationary distribution, and practical, since the distribution of test statistics does not depend on the distribution of datastream in stationary conditions (non-parametric monitoring). KQT-EWMA enables controlling false alarms by operating at a pre-determined Average Run Length ($ARL_0$), which measures the expected number of stationary samples to be monitored before triggering a false alarm. The latter peculiarity is in contrast with most non-parametric change-detection tests, which rarely can control the $ARL_0$ a priori. Our experiments on synthetic and real-world datasets demonstrate that KQT-EWMA can control $ARL_0$ while achieving detection delays comparable to or lower than state-of-the-art methods designed to work in the same conditions.

This paper proposes an online framework for analyzing calcium imaging data. This framework is built upon the popular and now widely used constrained non-negative matrix factorization (CNMF) method for cell segmentation and calcium time-series analysis (Pnevmatikakis, et al., 2016). While the existing CNMF approach is now being used by many labs across the country, I've talked to many neuroscientists that complain that this method cannot be applied to large datasets and thus its application has been limited. This work extends this method to a real-time decoding setting, making it an extremely useful contribution for the neuroscience community. The paper is well written and the results are compelling.

Surgical phase recognition is critical for assisting surgeons in understanding surgical videos. Existing studies focused more on online surgical phase recognition, by leveraging preceding frames to predict the current frame. Despite great progress, they formulated the task as a series of frame-wise classification, which resulted in a lack of global context of the entire procedure and incoherent predictions. Moreover, besides online analysis, accurate offline surgical phase recognition is also in significant clinical need for retrospective analysis, and existing online algorithms do not fully analyze the entire video, thereby limiting accuracy in offline analysis. To overcome these challenges and enhance both online and offline inference capabilities, we propose a universal Surgical Phase Localization Network, named SurgPLAN++, with the principle of temporal detection. To ensure a global understanding of the surgical procedure, we devise a phase localization strategy for SurgPLAN++ to predict phase segments across the entire video through phase proposals. For online analysis, to generate high-quality phase proposals, SurgPLAN++ incorporates a data augmentation strategy to extend the streaming video into a pseudo-complete video through mirroring, center-duplication, and down-sampling. For offline analysis, SurgPLAN++ capitalizes on its global phase prediction framework to continuously refine preceding predictions during each online inference step, thereby significantly improving the accuracy of phase recognition. We perform extensive experiments to validate the effectiveness, and our SurgPLAN++ achieves remarkable performance in both online and offline modes, which outperforms state-of-the-art methods. The source code is available at https://github.com/lxj22/SurgPLAN-Plus.

According to [2], 11.6% of men will develop prostate cancer in their lifetime, with approximately a 20% death rate in the United States. Radical prostatectomy is a popular surgical approach to treat PCa by removing the entire prostate gland since 1905 [3,4]. In clinical practice, the traditional open radical prostatectomy (ORP) has almost been replaced by laparoscopic radical prostatectomy (RLP) [5]. As a minimally invasive surgical procedure for PCa, RLP significantly reduces blood loss, hospitalization duration, and postoperative complications [6]. However, the long learning curve associated with laparoscopic procedures limits the application of RLP [7]. Robot-assisted laparoscopic prostatectomy (RALP) has been demonstrated [5] to shorten this learning curve by leveraging the wristed instruments and the 3-D endoscopic camera of the telerobotic surgical system, usually the da Vinci surgical system, to achieve intuitive operation [8]. However, the endoscopic camera cannot localize the prostate lesions nor visualize the sub-surface anatomy of the prostate gland. Therefore, a complementary medical imaging modality is necessary to facilitate RALP.

The Internet of Things (IoT) system generates massive high-speed temporally correlated streaming data and is often connected with online inference tasks under computational or energy constraints. Online analysis of these streaming time series data often faces a trade-off between statistical efficiency and computational cost. One important approach to balance this trade-off is sampling, where only a small portion of the sample is selected for the model fitting and update. Motivated by the demands of dynamic relationship analysis of IoT system, we study the data-dependent sample selection and online inference problem for a multi-dimensional streaming time series, aiming to provide low-cost real-time analysis of high-speed power grid electricity consumption data. Inspired by D-optimality criterion in design of experiments, we propose a class of online data reduction methods that achieve an optimal sampling criterion and improve the computational efficiency of the online analysis. We show that the optimal solution amounts to a strategy that is a mixture of Bernoulli sampling and leverage score sampling. The leverage score sampling involves auxiliary estimations that have a computational advantage over recursive least squares updates. Theoretical properties of the auxiliary estimations involved are also discussed. When applied to European power grid consumption data, the proposed leverage score based sampling methods outperform the benchmark sampling method in online estimation and prediction. The general applicability of the sampling-assisted online estimation method is assessed via simulation studies.